[!] Read header lines of OOI Base32 file

Read header lines with non-spectroscopic information of OOI Base32 (version 2.0.0.5) file.

file

Format

An object of class character of length 1.

Arguments

file: The name of the file which header lines are to be read from.
dec: The character used in the file for decimal points. Default is a point (.).
n: Number of lines to be read. Default is 17.
last_headerline_text: The text, that indicates the last line of the header lines and the beggining of spectroscopic information. Default is ">>>>>Begin Spectral Data<<<<<".
text: Text of header as if it was read with function readLines. If text is provided, file is ignored.

Value

A list with 2 enties:

$dataA dataframe with information, that contains these variable names:
1 Date
2 Time
3 Graph_Title
4 User
5 Spectrometer_Serial_number
6 Spectrometer_Type
7 ADC_Type
8 Spectrometer_Channel
9 software_info
10 Integration_time
11 Integration_time_Units
12 Scans_averaged
13 Boxcar_width
14 Electric_dark_correction
15 Time_Normalized
16 Dual_beam_Reference
17 Reference_Channel
18 Temperature
19 n_pixels_in_spectrum
$last_header_line The number of the last header line

Other spHelper functions for spectroscopy and hyperSpec: IQR_outliers(), binning(), gapDer(), hy2mat(), hyAdd_Label_wl(), hyAdd_Labels_PAP_PD_2014(), hyAdd_Labels_TD2009(), hyAdd(), hyDrop_NA(), hyGet_palette(), hyRm_palette(), mad_outliers(), mean_Nsd(), median_Nmad(), plot_hyPalette(), prepare_PAP_RK_2014__MATLAB_failui(), read.OOIBase32(), read.OceanView.header(), read.OceanView(), read.sp.csv2(), read3csv2hy(), replace_spc(), sd_outliers(), spStat(), sp_class_perform()

Other functions to read spectroscopic data: read.OOIBase32(), read.OceanView.header(), read.OceanView()

Author

Vilmantas Gegzna

Examples


# \donttest{
if (FALSE) {

 read.OOIBase32.header("MySpectra.Scope")
 read.OOIBase32.header("MySpectra.Scope")$data

}# }


## OOIBase32 Version 2.0.0.5 Data File:

#
#      OOIBase32 Version 2.0.0.5 Data File
#      ++++++++++++++++++++++++++++++++++++
#      Date: 03-04-2014, 15:00:04
#      User: Valued Ocean Optics Customer
#      Spectrometer Serial Number:
#      Spectrometer Channel: Master
#      Integration Time (msec): 5000
#      Spectra Averaged: 1
#      Boxcar Smoothing: 0
#      Correct for Electrical Dark: Enabled
#      Time Normalized: Disabled
#      Dual-beam Reference: Disabled
#      Reference Channel: Master
#      Temperature: Not acquired
#      Spectrometer Type: S2000
#      ADC Type: USB2000
#      Number of Pixels in File: 2048
#      Graph Title:
#      >>>>>Begin Spectral Data<<<<<